PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_13048_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 378aa MW: 43246.7 Da PI: 9.431

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_13048_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.8e-05	133	156	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C Cg+ F +++ L++H + H cra_locus_13048_iso_2_len_2225_ver_3 133 YICRVCGRKFYTNEKLMNHFKQiH 156 89*****************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.1010	8.6E-11	53	90	IPR029060	PIN domain-like
Gene3D	G3DSA:3.30.160.60	6.0E-4	132	157	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.01E-5	132	158	No hit	No description
PROSITE profile	PS50157	12.404	133	161	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0098	133	156	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	135	156	IPR007087	Zinc finger, C2H2
CDD	cd06167	5.61E-17	150	285	No hit	No description
Pfam	PF01936	1.1E-11	205	285	IPR021139	NYN domain, limkain-b1-type
Gene3D	G3DSA:3.40.50.1010	8.6E-11	218	286	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MKIIQIHHLF TAVESNGNLQ KLTPAILLYR CCHFGSSSAF SDKSASLTRR VAQKNVGVFW 60 DLDNKPPKSL PPYDAATRLK KAMMEFGFVK YMIAYANHHA FSYVPPEVLA QRKERKALSQ 120 LEKKGVLKPN VPYICRVCGR KFYTNEKLMN HFKQIHESEQ KKRLNQIESA RGKRRATLIG 180 KYSMKMEKYK NAARDVLTPK VGYGLADELK RAGFWVRTVS DKPQAADIEL RTRMVDMMDN 240 RQIDCVVLVS DDSDFVGVLK EAKMRCLRTV VVGDCNDGAL KRTADAAFSW QEIMMGKAKK 300 EAVSVVEHWK DRDVLKRLEW TYDPEMDRKL YYSDVESNSS DIEDFFSSEG DASVQKKGTG 360 AWWELEPSTE IVDASEIQ

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MKIIQIHHLF TAVESNGNLQ KLTPAILLYR CCHFGSSSAF SDKSASLTRR VAQKNVGVFW  60
DLDNKPPKSL PPYDAATRLK KAMMEFGFVK YMIAYANHHA FSYVPPEVLA QRKERKALSQ  120
LEKKGVLKPN VPYICRVCGR KFYTNEKLMN HFKQIHESEQ KKRLNQIESA RGKRRATLIG  180
KYSMKMEKYK NAARDVLTPK VGYGLADELK RAGFWVRTVS DKPQAADIEL RTRMVDMMDN  240
RQIDCVVLVS DDSDFVGVLK EAKMRCLRTV VVGDCNDGAL KRTADAAFSW QEIMMGKAKK  300
EAVSVVEHWK DRDVLKRLEW TYDPEMDRKL YYSDVESNSS DIEDFFSSEG DASVQKKGTG  360
AWWELEPSTE IVDASEIQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009770203.1	1e-179	PREDICTED: uncharacterized protein LOC104220938 isoform X1
TrEMBL	M0ZKC8	1e-175	M0ZKC8_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400002601	1e-174	(Solanum tuberosum)